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Correction Volume 14, Issue 8 pp 3720-3721
Correction for: CD36 upregulates DEK transcription and promotes cell migration and invasion via GSK-3β/β-catenin-mediated epithelial-to-mesenchymal transition in gastric cancer
Relevance score: 18.195171Jin Wang, Ti Wen, Zhi Li, Xiaofang Che, Libao Gong, Zihan Jiao, Xiujuan Qu, Yunpeng Liu
Keywords: CD36, epithelial-to-mesenchymal transition, gastric cancer, DEK
Published in Aging on April 29, 2022
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Research Paper Volume 13, Issue 5 pp 7499-7516
BDKRB2 is a novel EMT-related biomarker and predicts poor survival in glioma
Relevance score: 18.195171Ying Yang, Jin Wang, Fei Shi, Aijun Shan, Shihai Xu, Wen Lv
Keywords: glioma, BDKRB2, epithelial-to-mesenchymal transition, EMT, prognosis
Published in Aging on March 3, 2021
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Research Paper Volume 13, Issue 4 pp 4999-5019
HOXB9 enhances the ability of lung cancer cells to penetrate the blood-brain barrier
Relevance score: 13.273514HongShan Zheng, ChenLong Li, ZhenZhe Li, KaiBin Zhu, HongBo Bao, JinSheng Xiong, Peng Liang
Keywords: brain metastasis, non-small cell lung cancer, blood-brain barrier, HOXB9, epithelial-to-mesenchymal transition
Published in Aging on December 19, 2020
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Research Paper Volume 13, Issue 2 pp 1883-1897
CD36 upregulates DEK transcription and promotes cell migration and invasion via GSK-3β/β-catenin-mediated epithelial-to-mesenchymal transition in gastric cancer
Relevance score: 18.195171Jin Wang, Ti Wen, Zhi Li, Xiaofang Che, Libao Gong, Zihan Jiao, Xiujuan Qu, Yunpeng Liu
Keywords: CD36, epithelial-to-mesenchymal transition, gastric cancer, DEK
Published in Aging on November 21, 2020
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Research Paper Volume 12, Issue 14 pp 14141-14156
Long noncoding RNA AC092171.4 promotes hepatocellular carcinoma progression by sponging microRNA-1271 and upregulating GRB2
Relevance score: 17.377037Chengjun Sun, Shanzhou Huang, Yuchen Hou, Zhongqiu Li, Dongmei Xia, Lishan Zhang, Yixi Zhang, Yifeng Cai, Ziming Wang, Qi Zhou, Xiaoshun He, Linwei Wu
Keywords: cancer, hepatocellular carcinoma, AC092171.4, epithelial-to-mesenchymal transition, survival
Published in Aging on July 21, 2020
AC092171.4 is upregulated in HCC tissues. (A) Quantitative real-time PCR (qRT-PCR) analysis of AC092171.4 expression in HCC (n=369) and normal liver (n=50) tissues from the GEPIA database. As shown, AC092171.4 levels are higher in HCC tissues compared to normal liver tissues (*p<0.05). (B) QRT-PCR analysis of AC092171.4 expression in 70 pairs of HCC and corresponding ANLTs. As shown, AC092171.4 levels are higher in HCC tissues compared to adjacent normal liver tissues (ANLTs; ****p<0.0001). (C) QRT-PCR analysis showing AC092171.4 expression was significantly higher in the Huh7 and LM3 HCC cell lines than PLC/PRF/5 and Hep3B cells. (D) Chromogenic in situ hybridization (CISH) analysis of AC092171.4 expression in 95 pairs of HCC and ANLTs in a representative photograph. The results show that AC092171.4 expression is higher in HCC tissues compared to ANLTs (p<0.001). (E) Kaplan-Meier survival curve analyses of overall survival (OS) and disease-free survival (DFS) in HCC patients with low (n=42) and high (n=53) AC092171.4 expression. (F) Kaplan-Meier survival curve analyses of overall survival (OS) and disease-free survival (DFS) in high and low AC092171.4-expressing HCC patients of the GEPIA dataset (tumor=369, normal=50). * denotes p<0.05.
AC092171.4 silencing decreases proliferation, migration and invasion in HCC cell lines. (A) QRT-PCR analysis shows AC092171.4 expression in the sh-NC and sh-AC092171.4 transfected Huh7 and LM3 cells. (B) CCK-8 assay results show proliferation status of the sh-NC and sh-AC092171.4 transfected Huh7 and LM3 cells. (C) EdU assay results show proliferation status of the sh-NC and sh-AC092171.4 transfected Huh7 cells. (D) Colony formation assay results show the total number of colonies in the sh-NC and sh-AC092171.4 transfected Huh7 cells. (E) EdU assay results show proliferation status of the sh-NC and sh-AC092171.4 transfected LM3 cells. (F) Colony formation assay results show the total number of colonies in the sh-NC and sh-AC092171.4 transfected LM3 cells. (G) Transwell migration assay results show AC092171.4 downregulation inhibited cell migration and invasion after transfection. (H) Transwell invasion assay results show the numbers of invasive sh-NC and sh-AC092171.4 transfected Huh7 and LM3 cells. (I) Representative western blot shows the expression of E-cadherin (epithelial marker) as well as N-cadherin and vimentin (mesenchymal markers) in the sh-NC and sh-AC092171.4 transfected Huh7 and LM3 cells. β-actin was used as loading control. * denotes p<0.05.
AC092171.4 overexpression increases proliferation, invasion and migration in HCC cell lines. (A) QRT-PCR analysis shows AC092171.4 levels in the control and AC092171.4 overexpressing PLC/PRF/5 and Hep3B cells. (B) CCK-8 assay results show cell proliferation status of control and AC092171.4 overexpressing PLC/PRF/5 and Hep3B cells. (C) EdU assay results show proliferation status of control and AC092171.4 overexpressing PLC/PRF/5 cells. (D) EdU assay results show proliferation status of control and AC092171.4 overexpressing Hep3B cells. (E) Colony formation assay results show the total number of colonies in control and AC092171.4 overexpressing PLC/PRF/5 cells. (F) Colony formation assay results show the total number of colonies in control and AC092171.4 overexpressing Hep3B cells. (G and H) Transwell migration assay results show the total numbers of migrating control and AC092171.4 overexpressing PLC/PRF/5 and Hep3B cells. (I and J) Transwell invasion assay results show the total numbers of invasive control and AC092171.4 overexpressing PLC/PRF/5 and Hep3B cells. (K) Representative western blot shows the expression of E-cadherin (epithelial marker) as well as N-cadherin and vimentin (mesenchymal markers) in control and AC092171.4 overexpressing PLC/PRF/5 and Hep3B cells. * denotes p<0.05.
AC092171.4 knockdown represses in vivo xenograft HCC tumor growth and pulmonary metastases. (A) Balb/c nude mice were subcutaneously injected with sh-NC or sh-AC092171.4 transfected Huh7 cells and tumor from respective groups were shown (n=5). (B, C) Xenograft tumor volume and weights in nude mice subcutaneously injected with sh-NC or sh-AC092171.4 transfected Huh7 cells. (D, E) Immunohistochemical analysis shows percentage of Ki-67-positive stained cells in the sections of xenograft tumors from control and AC092171.4 knockdown nude mice. (F, G) Total numbers of pulmonary metastatic nodules in nude mice injected with control and AC092171.4 knockdown Huh-7 cells through the tail vein. * denotes p<0.05.
AC092171.4 regulates GRB2 protein expression by competitively binding miR-1271. (A) QRT-PCR analysis shows miR-1271 levels in sh-NC and sh-AC092171.4-transfected HCC cells. (B) QRT-PCR analysis shows miR-1271 levels in control and AC092171.4 overexpressing HCC cells. (C) Dual luciferase reporter assay results show relative firefly luciferase activity in HCC cells transfected with wild-type or mutant AC092171.4 and miR-1271 mimics. (D) Pearson’s correlation analysis shows the association between AC092171.4 and miR-1271 levels in 45 HCC tissue samples from 70 pair HCC specimens. (E) Dual luciferase reporter assay results show relative firefly luciferase activity in HCC cells transfected with WT or mutant 3’UTR of GRB2 and miR-1271 mimics. (F) Western blot results show GRB2 protein levels in HCC cells transfected with miR-1271 mimics or miR-1271 inhibitors. (G) Pearson’s correlation analysis shows the relationship between AC092171.4 and GRB2 mRNA levels in HCC tissues from the TCGA datasets in GEPIA website. (H) Pearson’s correlation analysis shows the relationship between AC092171.4 and GRB2 mRNA levels in HCC tissues from the TCGA datasets. (I) Western blot analysis shows GRB2 protein expression in HCC cells transfected with AC092171.4-shRNA plus miR-1271 inhibitor or AC092171.4-shRNA alone. * denotes p<0.05.
AC092171.4 promotes proliferation, migration, and invasiveness of HCC cells by suppressing miR-1271-dependent downregulation of GRB2 protein translation. (A) CCK-8 assay results show proliferation of Huh-7 and LM3 cells transfected with sh-NC, sh-AC092171.4, sh-NC plus miR-1271 inhibitor, or sh-AC092171.4 plus miR-1271 inhibitor. (B) Colony formation assays show the numbers of colonies formed by Huh-7 cells transfected with sh-NC, sh-AC092171.4, sh-NC plus miR-1271 inhibitor, or sh-AC092171.4 plus miR-1271 inhibitor. (C) Transwell assay results show the total numbers of migratory and invasive Huh-7 cells transfected with sh-NC, sh-AC092171.4, sh-NC plus miR-1271 inhibitor, or sh-AC092171.4 plus miR-1271 inhibitor. (D) Colony formation assays show the numbers of colonies formed by LM3 cells transfected with sh-NC, sh-AC092171.4, sh-NC plus miR-1271 inhibitor, or sh-AC092171.4 plus miR-1271 inhibitor. (E) Transwell assay results show the total numbers of migratory and invasive LM3 cells transfected with sh-NC, sh-AC092171.4, sh-NC plus miR-1271 inhibitor, or sh-AC092171.4 plus miR-1271 inhibitor. (F) Western blot analysis shows relative levels of E-cadherin, N-cadherin and vimentin levels in HCC cells transfected with shRNA-AC092171.4 alone or shRNA-AC092171.4 plus miR-1271 inhibitor. (G) CCK-8 assay results show the proliferation status in AC092171.4-silenced and sh-AC092171.4-silenced plus GRB2 overexpressing Huh7and LM3 cells. (H, I) Transwell assay results show the migration status of AC092171.4-silenced and sh-AC092171.4-silenced plus GRB2 overexpressing Huh7and LM3 cells. * denotes p<0.05.
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Research Paper Volume 12, Issue 3 pp 2333-2346
Long non-coding RNA NNT-AS1 promotes cholangiocarcinoma cells proliferation and epithelial-to-mesenchymal transition through down-regulating miR-203
Relevance score: 14.187396Yulei Gu, Zhiqiang Zhu, Hui Pei, Dong Xu, Yumin Jiang, Luanluan Zhang, Lili Xiao
Keywords: long non-coding RNA NNT-AS1, cholangiocarcinoma, proliferation, epithelial-to-mesenchymal transition, miR-203
Published in Aging on February 5, 2020
NNT-AS1 overexpression was occurred in CCA. NNT-AS1 levels in CCA tissues (A) and cell lines (B) were measured through qRT-PCR. * P < 0.05 and ** P < 0.01 contrasted with indicated group.
Effects of NNT-AS1 on the growth of CCLP1 and TFK1 cells, which were transfected with pcDNA-NNT-AS1 and si-NNT-AS1. (A) NNT-AS1 level was examined via qRT-PCR. (B) Proliferation was examined via BrdU. Expression of cyclinD1 was examined via western blot (C) and analyzed quantitatively (D) in both cells. (E) Apoptosis was examined via flow cytometry. Expression of cleaved-caspase-3 was examined via western blot (F) and analyzed quantitatively (G) in both cells. * P < 0.05, ** P < 0.01 and *** P < 0.001 contrasted with indicated set.
Effect of NNT-AS1 on EMT in CCLP1 and TFK1 cells, which were transfected with pcDNA-NNT-AS1 and si-NNT-AS1. Expression of EMT relative factors was examined via western blot (A, C) and analyzed quantitatively (B, D) in CCLP1 and TFK1 cells. * P < 0.05 and ** P < 0.01 contrasted with indicated set.
The interaction between NNT-AS1 and miR-203 or miR-203 and IGF1R/ZEB1 was examined. (A) The target matching sequence of NNT-AS1 and miR-203. (B) Luciferase activity was measured after co-transfection with NNT-AS1-wt or NNT-AS1-mut and miR-203 mimic or NC mimic. (C) Level of miR-203 was measured via qRT-PCR when cells were transfected with pcDNA-NNT-AS1 and si-NNT-AS1. (D) The target matching sequence of miR-203 and IGF1R/ZEB1. (E–F) Luciferase activities were measured after co-transfection with IGF1R/ZEB1-wt or IGF1R/ZEB1-mut and miR-203 mimic or NC mimic. (G–H) The mRNA and protein levels of IGF1R and ZEB1 were tested through qRT-PCR and western blot after transfection with miR-203 mimic or miR-203 inhibitor and the relative control. * P < 0.05 and ** P < 0.01 contrasted with indicated group.
Mechanism of NNT-AS1 on proliferation and EMT in CCLP1 and TFK1 cells after co-transfection with pcDNA-NNT-AS1 and miR-203 mimic. (A) Standard of miR-203 was examined via qRT-PCR by transfection with miR-203 mimic. (B) Proliferation was examined via BrdU. Expression of cyclinD1 was examined via western blot (C) and analyzed quantitatively (D) in both cells. Expression of EMT related factors was inspected via western blot (E, G) and analyzed quantitatively (F, H) in CCLP1 and TFK1 cells. * P < 0.05 and ** P < 0.01 contrasted with indicated set.
Mechanism of NNT-AS1 on PI3K/AKT and ERK1/2 passageways in CCLP1 and TFK1 cells, which were co-transfected with pcDNA-NNT-AS1 and miR-203 mimic. Expression of PI3K and AKT was measured via western blot (A, C) and analyzed quantitatively (B, D) in both cells. Expression of ERK1/2 was examined via western blot (E, G) and analyzed quantitatively (F, H) in both cells. * P < 0.05, ** P < 0.01 and *** P < 0.001 contrasted with indicated set.
NNT-AS1 regulated other miRNAs in CCA. The expression of miR-363, miR-129-5p and miR-142-3p was examined via qRT-PCR in CCLP1 (A) and TFK1 (B) cells. * P < 0.05 and ** P < 0.01 contrasted with indicated set.
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Research Paper Volume 12, Issue 1 pp 866-883
Prognostic value of epithelial-mesenchymal transition markers in clear cell renal cell carcinoma
Relevance score: 13.764213Hua Xu, Wen-Hao Xu, Fei Ren, Jun Wang, Hong-Kai Wang, Da-Long Cao, Guo-Hai Shi, Yuan-Yuan Qu, Hai-Liang Zhang, Ding-Wei Ye
Keywords: clear cell renal cell carcinoma, epithelial-to-mesenchymal transition, prognosis, tumor microenvironment, predictive model
Published in Aging on January 8, 2020
Analysis of the six EMT related genes in Oncomine database and TCGA database. (A) The Oncomine database was queried for the expression of CDH1, CDH2, SNAI1, SNAI2, VIM, and TWIST1 in the available datasets based on the following criteria: 1) “Cancer Type”; 2) “Gene: CDH1, CDH2, SNAI1, SNAI2, VIM, or TWIST1”; 3) “Data Type: mRNA”; 4) “Analysis Type: Cancer vs Normal Analysis”, and 5) Threshold Setting Condition (p<0.001, fold change >2, gene rank = top 10%). The 'red cells' represents gene overexpression and the 'blue cells' represent gene underexpression. The color intensity equals the percentile, i.e. Top 1%, 5%, or 10% significantly over- or underexpressed (see the legend below the grid). We found that CDH1 and SNAI2 was underexpressed in the kidney cancer vs normal datasets, while VIM was highly overexpressed. (B–G) Differential mRNA expression of six EMT related genes in clear cell renal cell carcinoma (ccRCC) tumor samples and adjacent normal tissues from TCGA. Epithelial marker CDH1 mRNA expression was significantly lower in tumor samples compared with adjacent normal tissues (B); Most mesenchymal markers (CDH2, SNAI1, VIM, and TWIST1) mRNA expression was elevated in tumor samples compared with adjacent normal tissues (C–G).
Kaplan Meier survival plot of ccRCC patients in TCGA database according to high and low mRNA expression of six EMT related genes.CDH1 mRNA expression was associated with both worse progression-free survival (p=0.015) and worse overall survival (p=0.003) of ccRCC patients (A, G); CDH2 mRNA expression was not an indicator of either progression-free survival (p=0.593) or overall survival (p=0.075) of ccRCC patients (B, H); Higher SNAI1 mRNA expression was moderately associated with both worse progression-free survival (p=0.054) and worse overall survival (p=0.010) of ccRCC patients (C, I); SNAI2 mRNA expression was not an indicator of either progression-free survival (p=0.105) or overall survival (p=0.242) of ccRCC patients (D, J); Higher VIM mRNA expression was associated with both worse progression-free survival (p<0.001) and worse overall survival (p=0.005) of ccRCC patients (E, K); Higher TWIST1 mRNA expression was associated with both worse progression-free survival (p<0.001) and worse overall survival (p<0.001) of ccRCC patients (F, L).
Kaplan Meier survival plot of ccRCC patients in FUSCC cohort according to high and low mRNA expression of six EMT related genes. Lower CDH1 mRNA expression was associated with both worse progression-free survival (p=0.016) and worse overall survival (p<0.001) of ccRCC patients (A, G); CDH2 mRNA expression was not an indicator of either progression-free survival (p=0.288) or overall survival (p=0.202) of ccRCC patients (B, H); Higher SNAI1 mRNA expression was associated with both worse progression-free survival (p<0.001) and worse overall survival (p<0.001) of ccRCC patients (C, I); Higher SNAI2 mRNA expression was associated with both worse progression-free survival (p=0.005) and worse overall survival (p<0.001) of ccRCC patients (D, J); Higher VIM mRNA expression was associated with both worse progression-free survival (p<0.001) and worse overall survival (p<0.001) of ccRCC patients (E, K); Higher TWIST1 mRNA expression was associated with both worse progression-free survival (p<0.001) and worse overall survival (p<0.001) of ccRCC patients (F, L).
Construction and internal validation of integrated prognostic and diagnostic model. All significant clinicopathologic parameters and gene expression profiles was integrated in the Cox regression models, which indicated this formula: = -0.708×CDH1 expression (ref. Low) + 1.360×SNAI1 expression (ref. Low) + 1.905×VIM expression (ref. Low) + 2.179×TWIST1 expression (ref. Low) + 1.274×T stage (ref. T1-T2) + 1.919×M stage (ref. M0) + 2.021×AJCC stage (ref. I-II) + 2.013×ISUP grade (ref. 1-2) for PFS (A), and another formula: = -0.564×CDH1 expression (ref. Low) + 1.532×SNAI1 expression (ref. Low) + 1.804×VIM expression (ref. Low) + 1.714×TWIST1 expression (ref. Low) + 1.226×T stage (ref. T1-T2) + 1.778×M stage (ref. M0) + 2.515×AJCC stage (ref. I-II) + 1.954×ISUP grade (ref. 1-2) for OS (B). The Kaplan–Meier method was used to determine the significant survival outcomes (PFS: p<0.0001; OS: p<0.0001). ROC curves were generated to validate the ability of the logistic model to predict prognosis. The AUC index for the integrated model were 0.886 for PFS (p<0.001) (C) and 0.814 for OS (p<0.001) (D). (E, F) External validation of integrated model using TCGA cohorts. ROC curves were constructed to perform external validation using clinicopathological parameters and mRNA expression profiles from TCGA cohort. The AUC index for the integrated model were 0.720 for PFS (p<0.001) (E) and 0.684 for OS (p<0.001) (F).
CDH1, CDH2, SNAI1, SNAI2 and TWIST1 significantly involved in stromal process of ccRCC tumor environment. EMT makers, including CDH1 (A), CDH2 (B), SNAI1 (C), SNAI2 (D), TWIST1 (F), but not VIM (E), showed significant correlation with stromal process in ccRCC environments (p<0.001). In addition, CDH1 showed negative association with stromal score (r2=-0.191), while stromal score positively correlated CDH2 (r2=0.337), SNAI1 (r2=0.199), SNAI2 (r2=0.201) and TWIST1 (r2=0.305) mRNA expression in ccRCC patients from TCGA cohort.
Module analysis and functional annotations of the six EMT related gene in silico. Protein-protein interaction (PPI), activation and indirect relation were predicted and displayed in association with sig EMT related genes (A). PPI network derived from active interaction sources was detailed illustrated with required interaction score equal 0.400 (B). GO and KEGG functional annotations analysis of CDH1, CDH2, SNAI1, SNAI2, VIM, TWIST1 was enriched in hemophilic cell adhesion and cell-cell adhesion of biologic process, adherens junction, anchoring junction and cell junction of cellular component, RPTP-like protein binding, phosphatase binding, protein phosphatase binding and enzyme binding of molecular function. Participating upstream or downstream signaling pathways enrichment include adherens junction, cell adhesion molecules (CAMs) of KEGG pathways (C). Hierarchical partitioning using transcriptional expression profiles of CDH1, CDH2, SNAI1, SNAI2, VIM, TWIST1 from FUSCC cohort (D). Hierarchical partitioning using transcriptional expression profiles of six hub genes from TCGA cohort was performed in the heat map (E).
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Research Paper Volume 10, Issue 12 pp 3662-3682
Long noncoding RNA B3GALT5-AS1 suppresses colon cancer liver metastasis via repressing microRNA-203
Relevance score: 15.311605Liang Wang, Zhewei Wei, Kaiming Wu, Weigang Dai, Changhua Zhang, Jianjun Peng, Yulong He
Keywords: long noncoding RNA, colon cancer, liver metastasis, microRNA, epithelial-to-mesenchymal transition
Published in Aging on December 10, 2018
The expression pattern of B3GALT5-AS1 in colon cancer and its association with prognosis. (A) The expression intensity of B3GALT5-AS1 in 18 pairs of normal colonic epithelium, primary colorectal cancers, and metastasized cancers in liver from GSE50760. (B) The expression of B3GALT5-AS1 in 64 pairs of primary colon cancer tissues and adjacent colonic epithelium tissues was detected using qRT-PCR. P < 0.0001, Wilcoxon signed-rank test. (C) The expression of B3GALT5-AS1 in 15 colon cancer tissues with metastasis and 49 colon cancer tissues without metastasis. P < 0.0001, Mann-Whitney test. (D) The expression of B3GALT5-AS1 in 15 pairs of primary colon cancer tissues and corresponding liver metastasis tissues was measured using qRT-PCR. P < 0.0001, Wilcoxon signed-rank test. (E) Kaplan-Meier survival analysis of the correlation between B3GALT5-AS1 expression level and overall survival of 64 colon cancer patients. The median expression level of B3GALT5-AS1 was used as cut-off. P = 0.0096, Log-rank test. (F) The expression of B3GALT5-AS1 in normal colonic epithelial cell line NCM460 and colon cancer cell lines HCT116, HT-29, LoVo, SW480 and SW620 was measured using qRT-PCR. Results are displayed as mean ± s.d. of three independent experiments. **P < 0.01, ***P < 0.001, Student’s t-test.
B3GALT5-AS1 suppressed colon cancer cell proliferation. (A) The expression of B3GALT5-AS1 in B3GALT5-AS1 stably overexpressed and control HCT116 cells was detected using qRT-PCR. (B) The expression of B3GALT5-AS1 in B3GALT5-AS1 stably depleted and control SW620 cells was detected using qRT-PCR. (C) Cell viability of B3GALT5-AS1 stably overexpressed and control HCT116 cells was detected using Glo cell viability assay. (D) Cell viability of B3GALT5-AS1 stably depleted and control SW620 cells was detected using Glo cell viability assay. (E) Cell proliferation of B3GALT5-AS1 stably overexpressed and control HCT116 cells was detected using EdU incorporation assay. The red color indicts EdU-positive cells. Scale bars = 100 μm. (F) Cell proliferation of B3GALT5-AS1 stably depleted and control SW620 cells was detected using EdU incorporation assay. The red color indicts EdU-positive cells. Scale bars = 100 μm. Results are displayed as mean ± s.d. of three independent experiments. **P < 0.01, ***P < 0.001, Student’s t-test.
B3GALT5-AS1 promoted migration, invasion, and EMT of colon cancer cells. (A) Cell migration of B3GALT5-AS1 stably overexpressed and control HCT116 cells was detected using transwell migration assay. Scale bars = 100 μm. (B) Cell migration of B3GALT5-AS1 stably depleted and control SW620 cells was detected using transwell migration assay. Scale bars = 100 μm. (C) Cell invasion of B3GALT5-AS1 stably overexpressed and control HCT116 cells was detected using transwell invasion assay. Scale bars = 100 μm. (D) Cell invasion of B3GALT5-AS1 stably depleted and control SW620 cells was detected using transwell invasion assay. Scale bars = 100 μm. (E) E-cadherin and N-cadherin mRNA levels in B3GALT5-AS1 stably overexpressed and control HCT116 cells were detected using qRT-PCR. (F) E-cadherin and N-cadherin protein levels in B3GALT5-AS1 stably overexpressed and control HCT116 cells were detected using western blot. (G) E-cadherin and N-cadherin mRNA levels in B3GALT5-AS1 stably depleted and control SW620 cells were detected using qRT-PCR. (H) E-cadherin and N-cadherin protein levels in B3GALT5-AS1 stably depleted and control SW620 cells were detected using western blot. Results are displayed as mean ± s.d. of three independent experiments. *P < 0.05, **P < 0.01, Student’s t-test.
B3GALT5-AS1 bound to the promoter of miR-203 and repressed the expression of miR-203. (A) The subcellular distribution of B3GALT5-AS1 in the cytoplasmic and nuclear fractions of HCT116 cells was evaluated using cytoplasmic and nuclear RNA isolation followed by qRT-PCR.β-actin and U6 were used as cytoplasmic and nuclear controls, respectively. (B) Schematic outline of the predicted interaction sites between B3GALT5-AS1 and the promoter of miR-203. (C) The expression of miR-203 in B3GALT5-AS1 stably overexpressed and control HCT116 cells was detected using qRT-PCR. (D) The expression of miR-203 in B3GALT5-AS1 stably depleted and control SW620 cells was detected using qRT-PCR. (E) ChIRP assays in HCT116 cells were carried out with anti-sense probe sets specific for B3GALT5-AS1 or LacZ (negative control). The enriched DNA was measured using qRT-PCR with specific primers against miR-203 promoter. (F) Schematic outline of the constructed different depletion transcripts of B3GALT5-AS1. (G) After transient transfections of the different B3GALT5-AS1 expressing plasmids into HCT116 cells, miR-203 expression was measured using qRT-PCR. (H) After transient co-transfection of the firefly luciferase reporter containing the promoter of miR-203, renilla luciferase expression plasmid pRL-TK, and the different B3GALT5-AS1 expression plasmids into HCT116 cells, luciferase activities were detected using dual luciferase reporter assays. Results are displayed as the relative ratio of firefly luciferase activity to renilla luciferase activity. (I) After transient co-transfection of the firefly luciferase reporter containing the promoter of miR-203 and pRL-TK into B3GALT5-AS1 stably depleted and control SW620 cells, luciferase activities were measured by dual luciferase reporter assays. Results are shown as the relative ratio of firefly luciferase activity to renilla luciferase activity. (J) After transient transfections of the different B3GALT5-AS1 expressing plasmids into HCT116 cells, the expression of ZEB2 and SNAI2 was detected using qRT-PCR and western blot. (K) The expression of ZEB2 and SNAI2 in B3GALT5-AS1 stably depleted and control SW620 cells was detected using qRT-PCR and western blot. Data are displayed as mean ± s.d. of three independent experiments. **P < 0.01, ***P < 0.001, NS, not significant, Student’s t-test
miR-203 expression pattern in colon cancer. (A) miR-203expression in 64 pairs of primary colon cancer tissues and adjacent colonic epithelium tissues was measured by qRT-PCR. P < 0.0001, Wilcoxon signed-rank test. (B) The correlation between B3GALT5-AS1 and miR-203 expression level in colon cancer tissues. n = 64, r = -0.7625, P < 0.0001, Pearson’s correlation analysis. (C) The expression of miR-203 in 15 pairs of primary colon cancer tissues and corresponding liver metastasis tissues was measured using qRT-PCR. P < 0.0001, Wilcoxon signed-rank test. (D) The expression of ZEB2 in 15 pairs of primary colon cancer tissues and corresponding liver metastasis tissues was measured using qRT-PCR. P = 0.0006, Wilcoxon signed-rank test. (E) The expression of SNAI2 in 15 pairs of primary colon cancer tissues and corresponding liver metastasis tissues was measured using qRT-PCR. P = 0.0034, Wilcoxon signed-rank test. (F) The expression of E-cadherin in 15 pairs of primary colon cancer tissues and corresponding liver metastasis tissues was measured using qRT-PCR. P < 0.0001, Wilcoxon signed-rank test. (G) The expression of N-cadherin in 15 pairs of primary colon cancer tissues and corresponding liver metastasis tissues was measured using qRT-PCR. P = 0.0002, Wilcoxon signed-rank test.
B3GALT5-AS1 inhibited colon cancer liver metastasis. (A) B3GALT5-AS1 expression in different B3GALT5-AS1 stably overexpressed HCT116 cells clones was measured using qRT-PCR. Data are displayed as mean ± s.d. of three independent experiments. ***P < 0.001, Student’s t-test. (B) Indicated B3GALT5-AS1 stably overexpressed HCT116 cells were intra-splenic injected to establish liver metastasis. The amount of liver metastatic foci was assessed at the 42th day after intra-splenic injection using HE staining. Scale bars = 1000 μm. (C) The expression of B3GALT5-AS1 and miR-203 in liver metastatic foci formed by these indicated B3GALT5-AS1 stably overexpressed HCT116 cells was detected using qRT-PCR. (D) Immunohistochemical staining of Ki67 in liver metastatic foci formed by these indicated B3GALT5-AS1 stably overexpressed HCT116 cells. Scale bars = 50 μm. (E) The expression of ZEB2 and SNAI2 in liver metastatic foci formed by these indicated B3GALT5-AS1 stably overexpressed HCT116 cells was measured using qRT-PCR. (F) The expression of E-cadherin and N-cadherin in liver metastatic foci formed by these indicated B3GALT5-AS1 stably overexpressed HCT116 cells was detected using qRT-PCR. For B-F, data are displayed as mean ± s.d. of six mice in each group. **P < 0.01, NS, not significant, Mann-Whitney test.
Depletion of B3GALT5-AS1 promoted colon cancer liver metastasis in a miR-203-dependent manner. (A) miR-203 expression in B3GALT5-AS1 and miR-203 concurrently depleted and control SW620 cells was measured using qRT-PCR. Data are displayed as mean ± s.d. of three independent experiments. **P < 0.01, Student’s t-test. (B) B3GALT5-AS1 and miR-203 concurrently depleted and control SW620 cells were intra-splenic injected to establish liver metastasis. The amount of liver metastatic foci was detected at the 42th day after intra-splenic injection using HE staining. Scale bars = 1000 μm. (C) The expression of B3GALT5-AS1 and miR-203 in liver metastatic foci formed by B3GALT5-AS1 and miR-203 concurrently depleted and control SW620 cells was detected using qRT-PCR. (D) Immunohistochemical staining of Ki67 in liver metastatic foci formed by B3GALT5-AS1 and miR-203 concurrently depleted and control SW620 cells. Scale bars = 50 μm. (E) The expression of ZEB2 and SNAI2 in liver metastatic foci formed by B3GALT5-AS1 and miR-203 concurrently depleted and control SW620 cells was measured using qRT-PCR. (F) The expression of E-cadherin and N-cadherin in liver metastatic foci formed by B3GALT5-AS1 and miR-203 concurrently depleted and control SW620 cells was detected using qRT-PCR. For B-F, data are displayed as mean ± s.d. of six mice in each group. **P < 0.01, Mann-Whitney test.
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Research Paper Volume 9, Issue 2 pp 524-546
Compound effects of aging and experimental FSGS on glomerular epithelial cells
Relevance score: 14.292585Remington R.S. Schneider, Diana G. Eng, J. Nathan Kutz, Mariya T. Sweetwyne, Jeffrey W. Pippin, Stuart J. Shankland
Keywords: kidney disease, glomerulus, parietal epithelial cell, podocyte, epithelial to mesenchymal transition, Collagen IV
Published in Aging on February 17, 2017
Albuminuria was higher in aged mice at baseline and in FSGS. (A-D) Sheep IgG staining. Sheep IgG staining confirmed the equal distribution of anti-glomerular antibody in the glomerular tuft in both young (Y) and aged (A) mice. Images were taken at 100x. (A'-D') 400x close-up images of glomeruli from (A-D). Sheep IgG deposition (purple color) was not seen in baseline mice as expected (A,B,A',B'). Animals given FSGS with the anti-glomerular antibody showed sheep IgG deposition in the glomerular tufts (C, D, C’, D'). (E) Albumin to creatinine ratios (ACR). ACRs (µg/mg) for young mice (black circles), and aged mice (white circles), at baseline prior to FSGS and at days 7, 14, 21 and 28 post-FSGS. ACR increased acutely for both young and aged animals to peak at D7, followed by gradual recovery for 21 days. Aged mice started with higher ACR at baseline and finished with significantly higher ACR at D28.
Podocyte density was lower at baseline in aged mice, and in aged mice with FSGS. (A-C) Quantification of podocyte density. Graphs A and B show the average podocyte density in podocytes per glomerular volume (µm3) for individual animals in OC and JM glomeruli respectively. Graph C shows podocyte density for individual animals when OC and JM glomeruli are combined, which serves as a representation of the entire section. Podocyte density was lower in aged baseline mice than young baseline mice in glomeruli of the OC (A), JM (B), and when combined (C). Aged FSGS mice also had lower podocyte density in OC (A), JM (B), and combined (C) glomeruli than young FSGS mice, despite young mice experiencing a larger magnitude of podocyte depletion with FSGS. (D-G) PAS/p57 double staining. Representative images of glomeruli at 20x magnification, with higher magnifications shown in D’-G’ of the glomerulus marked by solid black square. Podocytes were identified by p57+ staining (brown color, nuclear) against the pink PAS counterstain.
Parietal epithelial cell (PEC) activation was highest in aged FSGS mice. PECs were identified by PAX8 staining (green color, nuclear), and the subset of PECs undergoing activation were identified by CD44 staining (red color, cytoplasmic). (A-C) Quantitation of the percentage of PECs that are activated. (A) In outer cortical (OC) glomeruli, the percentage of PECs that were activated (PAX8+CD44+) along Bowman’s capsule (BC) was higher in aged mice at baseline and in FSGS. (B) In juxta-medullary (JM) glomeruli, the percentage of activated PECs were similar at baseline, but higher in aged FSGS mice compared to young FSGS mice. (C) When OC and JM glomeruli were combined, aged FSGS mice had the highest percentage of PECs that were activated. (D-G) Representative images of Pax8 and CD44 staining on BC. Images taken at 400x by confocal microscopy for PAX8 (green, nuclear), CD44 (red, cytoplasmic) and DAPI (blue, nuclear) staining. (D’-G’) Higher magnification of the white square shown above. Solid arrow shows examples of PAX8 staining; dashed arrow shows examples of CD44 below (D’-G’). As shown in the above graphs, the percentage of PECs along Bowman’s capsule that are activated was higher in aged baseline mice, and increased further at D28 of FSGS in aged mice.
Activated PECs migrated from Bowman’s capsule to the glomerular tuft in FSGS. (A-C) Quantitation showing the percentage of glomeruli with activated PECs (PAX8+CD44+) on the glomerular tuft. Aged FSGS mice had the highest percentage of activated PECs on the tufts of outer cortical (OC) (A), juxta-medullary (B) and combined OC and JM (C) glomeruli. (D-G) Representative images of Pax8 and CD44 staining on tuft. Images of glomeruli (400x) taken by confocal microscopy, showing staining for PAX8 (PEC marker, green, solid arrows), CD44 (activation marker, red, dashed arrows) and DAPI (nuclei, blue). Glomeruli are marked by the dashed line. (D’-G’) Higher power images of the area demarcated by the solid square shown above. PAX8 staining was detected along Bowman’s capsule in young baseline (D, D’) and aged baseline (E, E’) mice, but not in the glomerular tuft. (F, F’) In young FSGS mice, activated PECs were not readily detected on glomerular tufts. (G, G’) Activated PECs were detected on the glomerular tuft of aged FSGS mice. These results show that activated PECs were detected on the tuft of a subset of aged FSGS glomeruli.
Percentage of glomeruli with phosphorylated-ERK stained PECs was highest in aged baseline mice with FSGS. (A-C) Quantitation showing the percentage of glomeruli with pERK staining of PECs along Bowman’s capsule. Aged mice and aged mice with FSGS had a higher percentages of glomeruli with pERK staining along Bowman’s capsule when compared to their respective young baseline and young FSGS mice in outer cortical glomeruli (OC) (A), juxta-medullary glomeruli (B) and combined OC and JM glomeruli(C). Overall, aged FSGS mice had the highest percentage of glomerular with pERK staining (C). (D-G) Representative images of pERK staining along Bowman’s capsule. Representative images of glomeruli at 100x magnification, with 400x magnifications shown in D’-G’ of the glomeruli marked by solid black square. Dashed arrows indicate pERK negative and solid arrows indicated pERK positive glomeruli (100x) and PECs (400x).
EMT marker staining along Bowman’s capsule was highest in aged FSGS mice. (A-C) Quantitation showing the percentage of glomeruli with α-SMA (EMT marker) staining along BC. There was no significant difference in young and aged mice at baseline in OC (A), JM (B), or combined (C) glomeruli. In OC (A), JM (B), and combined (C) glomeruli, α-SMA staining increased with disease in aged animals, while only in the JM (B) was α-SMA staining significantly increased in young mice, likely due to large variation within the sample groups. (D-G) Representative images of glomeruli with alpha-SMA staining along BC taken at 40x. Frequency and intensity α-SMA staining increased with disease (D vs. F, E vs. G), despite similar levels between young and aged animals at baseline (D vs. E). (D’-G’) Higher power images of the area demarcated by the solid square shown above, emphasizing the increase in α-SMA staining of cells along BC (F’, G’).
Extracellular matrix accumulation was higher in Bowman’s capsule of aged FSGS mice. (A-L) Collagen IV (Col IV) staining. Representative images taken at 40x of Col IV staining (brown color) along Bowman’s capsule only (A-D, solid arrows), glomerular tuft only (E-H, dashed arrows), or along Bowman’s capsule and the glomerular tuft (I-L, solid and dashed arrows respectively). (M-X) Jones’(Silver) staining. Representative images taken at 40x of Jones’ basement membrane staining along BC only (M-P, yellow solid arrow), in the glomerular tuft only (Q-T, dashed yellow arrow), and both along BC and in the tuft (U-X, solid and dashed yellow arrows respectively) confirmed the staining patterns of Col IV.
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Research Paper pp undefined-undefined
miR-557 inhibits hepatocellular carcinoma progression through Wnt/β-catenin signaling pathway by targeting RAB10
Relevance score: 14.292585Xiaoye Cheng, Can Wu, Haocheng Xu, Ruixiang Zou, Taiyuan Li, Shanping Ye
Keywords: miR-557, RAB10, hepatocellular carcinoma, epithelial-to-mesenchymal transition, Wnt/β-catenin pathway
Published in Aging on Invalid Date